Genomics

Cloud Indexes for Bowtie, Kraken, HISAT, and Centrifuge

Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.

Listed for discovery. Access is provided by the original publisher under its terms.

Data coverage

Access & permitted use

Review the publisher’s documentation for availability, eligibility and permitted uses, including commercial analysis, model training and redistribution.

Public Domain

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Related data sources

Clinical trialsOpen API

ClinicalTrials.gov Study Records

Registered clinical studies, recruitment status, interventions, conditions, sponsors and reported results. Searchable structured records available through the ClinicalTrials.gov API.

ClinicalTrials.gov / U.S. National Library of Medicine

Drug safetyOpen API

FDA Drug Adverse Event Reports

Publicly releasable drug adverse event and medication error reports drawn from FAERS, provided as queryable JSON through openFDA.

U.S. Food and Drug Administration

Population healthPublic download

CDC BRFSS 2025 Survey Microdata

Annual U.S. behavioral risk-factor survey covering chronic conditions, health behaviors and preventive care. The 2025 release contains 356,158 survey records.

Centers for Disease Control and Prevention