Life sciences

NovoMCP Open Corpus (lite)

122,454,458 PubChem compounds with RDKit physicochemical descriptors, ADMET/toxicity predictions from NovoMCP's own models (most trained on the public Therapeutics Data Commons ADMET benchmark; a few base heads on other public toxicology data such as Tox21), a machine-learned logP, and PAINS structural-alert flags. One row per PubChem CID, stored as Apache Parquet (Snappy) for direct in-place querying (Athena, DuckDB, PyArrow, pandas). An analysis-ready cheminformatics substrate for drug discovery: virtual screening, drug-likeness (QED) filtering, similarity search, chemical-space exploration, and training ADMET models at scale...

Listed for discovery. Access is provided by the original publisher under its terms.

Data coverage

122,454,458 PubChem compounds with RDKit physicochemical descriptors, ADMET/toxicity predictions from NovoMCP's own models (most trained on the public Therapeutics Data Commons ADMET benchmark; a few base heads on other public toxicology data such as Tox21), a machine-learned logP, and PAINS structural-alert flags. One row per PubChem CID, stored as Apache Parquet (Snappy) for direct in-place querying (Athena, DuckDB, PyArrow, pandas). An analysis-ready cheminformatics substrate for drug discovery: virtual screening, drug-likeness (QED) filtering, similarity search, chemical-space exploration, and training ADMET models at scale — so you don't recompute descriptors and property predictions across all of PubChem yourself. Per-endpoint model provenance is documented in the dataset card. Computed properties and model predictions for research use — not experimental measurements or regulatory determinations.

Access & permitted use

Review the publisher’s documentation for availability, eligibility and permitted uses, including commercial analysis, model training and redistribution.

CC-BY-4.0 (https://creativecommons.org/licenses/by/4.0/)

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